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CABDyN Publications list

2013 - 2012 - 2011 - 2010 - 2009 - 2008 - 2007 - 2006 - 2005 - 2004

2014 - Publications in reverse chronological order

Karsai, M., Ińiguez, G., Kaski, K., Kertész, J.,
Complex contagion process in spreading of online innovation Interface, Journal of the Royal Society.

Karsai, M., Ińiguez, G., Kaski, K., Kertész, J.,
Complex contagion process in spreading of online innovation Interface, Journal of the Royal Society.

Gleeson, J.P., Cellai, D., Onnela, J.-P., Porter, M.A., Reed-Tsochas, F.
A simple generative model of collective online behavior, PNAS,

Bettencourt, L.M.A., Samaniego, H., Youn, H.,
Professional diversity and the productivity of cities, Nature, Scientific Reports 4, 5393.

Lux, T., Fricke, D.,
Core-periphery structure in the overnight money market: evidence from the e-MID trading platform, Computational Economics (2014)

Salnikov, V., Schien, D., Youn H., Lambiotte, R., Gastner, M.,
The geography and carbon footprint of mobile phone use in Cote d’Ivoire, EPJ Data Science 3:3, doi:10.1140/epjds21

Fricke, D., Finger, K.,
Tax evasion in an artificial financial market, QBER Discussion Paper 01/000

Saramäki, J., Leicht, E.A., López, E., Roberts, S.G.B., Reed-Tsochas, F., Dunbar, R.I.M
Persistence of social signatures in human communication, PNAS, doi: 10.1073/pnas.1308540110

2013 -             Back 

Cellai, D., López, E., Zhou, J., Gleeson, J.P., Bianconi, G.,
"Percolation in multiplex networks with overlap" Physical Review E, vol.88, 052811, doi:10.1103/PhysRevE.88.052811

Farmer, J.D., Gerig, A., Lillo, F., Waelbroeck
"How efficiency shapes market impact" Quantitative Finance, 13(11), doi:10.1080/14697688.2013.848464

O. Curry, R. Dunbar
"Do birds of a feather flock together? The relationship between similarity and altruism in social network"Human Nature, 24(3), doi: 10.1007/s12110-013-9174-z
September 2013

J. Smart, S. Sivadasan, L. Huaccho Huatuco, A. Calinescu
"Reducing schedule instability by identifying and omitting complexity-adding information flows at the supplier–customer interface" International Journal of Production Economics, volume 145, issue 1, doi: 10.1016/j.ijpe.2013.04.043
September 2013

T. Lux, D. Fricke
"The effects of a financial transaction tax in an artificial financial market" Springer, doi:10.1007/s11403-013-0116-y

T. Dávid-Barrett, R. Dunbar
"Processing power limits social group size: computational evidence for the cognitive costs of sociality" Proc. R. Soc. Lond. 280B, doi:10.1098/rspb.2013.1151

D. Garlaschelli, S. E. Ahnert, T. M. A. Fink, G. Caldarelli
"Low-temperature behaviour of social and economic networks" Entropy 2013, 15(8), 3238-3259, doi: 10.3390/e15083238

López, E.,
"The distribution of the number of node neighbours in random hypergraphs" Journal of Physics A: Mathematical and Theoretical, vol. 46, 305003, Journal of Physics A: Mathematical and Theoretical, vol. 46, 305003, doi:10.1088/1751-8113/46/30/305003

Y. M. Lai, M. A. Porter
"Noise-induced synchronization, desynchronization, and clustering in globally coupled nonidentical oscillators" Physical Review E, Vol. 88, No. 1: 012905, doi: 10.1103/PhysRevE. 88.012905

G. Rosser, A. G. Fletcher, P. K. Maini, R. E. Baker
"The effect of sampling rate on observed statistics in a correlated random walk" J. R. Soc. Interface., 10, 1742-5662, doi: 10.1098/rsif.2013.0273

O. Curry, S. Roberts, R. Dunbar
"Altruism in social networks: evidence for a 'kinship premium' " Brit. J. Psychol. 104: 283-195, doi: 10.1111/j.2044-8295.2012.02119.x
May 2013

Eduardo López
"Weighted projected networks: Mapping hypergraphs to networks" Phys. Rev. E 87, 052813 (2013) [13 pages]

A. Gerig, K. D. Olum, A. Vilenkin
"Universal doomsday: analyzing our prospects for survival" Journal of Cosmology and Astroparticle Physics, doi:10.1088/1475-7516/2013/05/013

C. Stanley, R. Dunbar
"Consistent social structure and optimal clique size revealed by social network analysis of feral goats, Capra hircus" Anim. Behav. 85: 771-779,
April 2013

S. Bottini, A. Bernini, M. De Chiara, D. Garlaschelli, O. Spiga, M. Dioguardi, E. Vannuccini, A. Tramontano, N. Niccolai
"ProCoCoA: A quantitative approach for analyzing protein core composition" Computational Biology and Chemistry 43: 29-34, doi: org/10.1016/j.compbiolchem.2012.12.007
April 2013

G. Fagiolo, T. Squartini, D. Garlaschelli
"Null models of economic networks: the case of the world trade web" Journal of Economic Interaction and Coordination 8: 1.75-107, doi: 10.1007/s1403-012-0101-07

C. Wang, K. J. H. Law, P. G. Kevrekidis, M. A. Porter
"Dark solitary waves in a class of collisionally inhomogeneous Bose-Einstein condensates" Physical Review A, Vol. 87, No. 2: 023621, doi: 10.11.003/PhysRevA.87.023621

S. Kelly, P.K. Maini
"DendroBLAST: approximate phylogenetic trees in the absence of multiple sequence alignments" PLOS One, 8, e58537, doi:10.1371/journal.pone.0058537

S. Rankovic, M. A. Porter
"Two-particle circular billiards versus randomly perturbed one-particle circular billiards" Chaos, Vol. 23, No. 1: 013123, doi: 10.1063/1.4775756

S. Melnik, J. A. Ward, J. P. Gleeson, M. A. Porter
"Multi-stage complex contagions" Chaos, Vol. 23, No. 1: 013124, doi: 10.1063/1.4790836

V. Palchykov, J. Kertész, R. Dunbar, K. Kaski
"Close Relationships: A study of mobile communication records" J. Stat. Phys. 151: 735-744, doi: 10.1007/s10955-013-0705-0

J. Smart, A. Calinescu, L. Huaccho Huatuco
"Extending the information-theoretic measures of the dynamic complexity of manufacturing systems" International Journal of Production Research, volume 51, issue 2, doi: 10.1080/00207543.2011.638677
January 2013

G. Miritello, E. Moro, R. Lara R. Martínez-López, J. Belchamber, S. Roberts, R. Dunbar
"Time as a limited resource: Communication strategy in mobile phone networks" Social Networks 35: 89-95
January 2013

2012 -             Back 

F. Ruzzenenti, F. Picciolo, R. Basosi, D. Garlaschelli
"Spatial effects in real networks: measures, null models, and applications" Physical Review E 86: 066110, doi: 10.1103/PhysRevE.86.066110

C. D. Martin, M. A. Porter
"The Extraordinary SVD"American Mathematical Monthly, Vol. 119, No. 10:838-851, doi: org/10.4169/amer.math.monthly.119.10.838

J. Smart, M. Scott, J. B. McCarthy, K. T. Tan, P. Argyrakis, S. Bishop, R. Conte, S. Havlin, M. San Miguel, D. Stuffacher
"Big science and big administration:Confronting the governance, financial and legal challenges of FuturICT" The European Physical Journal: Special Topics, volume 214, issue 1, doi: 10.1140/epjst/e2012-01708-x
November 2012

A.J. Connor, J. Cooper, H.M. Byrne, P.K. Maini
"Object-oriented paradigms for modelling vascular tumor growth: a case study" SIMUL 2012: The Fourth International Conference on Advances in System Simulation, P. Dini and P. Lorenz (eds), ISBN: 978-1-61208-234-9
November 2012

A. V. Mantzaris, D. S. Bassett, N. F. Wymbs, E. Estrada, M. A. Porter, P. J. Mucha, S. T. Grafton, J.Desmond
"Dynamic network centrality summarizes learning in the human brain" Journal of Complex Networks, Vol. 1, No. 1: 83-92, doi: 10.1093/comnet/cnt001

D. S. Bassett, E. T. Owens, K. E. Daniels, M. A. Porter
"Influence of network topology on sound propagation in granular materials" Physical Review E, Vol. 86, No. 4: 0411306, doi: 10.1103/PhysRevE.86.041306

T. Hoffmann, M. A. Porter, R. Lambiotte
"Generalized master equations for non-Poisson dynamics on networks" Physical Review E, Vol. 86, No.4: 046102, doi: 10.1103/PhysRevE.86.046102

A. C. F. Lewis, N. S. Jones, M. A. Porter, Ch. M. Deane
"What evidence is there for the homology of protein-protein interactions?" PLoS Computational Biology, Vol. 8, No. 9: e1002645, doi: 10.1371/journal.pcbi.1002645

J.-P. Onnela, D. J. Fenn, S. Reid, M. A. Porter, P. J. Mucha, M. D. Fricker, N. S. Jones
"Taxonomies of networks from community structure" Physical Review E Vol. 86, No. 036104, doi: 10.1103/PhysRevE.86.036104

T. Dávid-Barrett, R. Dunbar
"Cooperation, behavioural synchrony and status in social networks" J. Theoret. Biol. 308:88-95, doi: 10.1016/j.jbti.2012.05.007

L. Dyson, P.K. Maini, R.E. Baker
"Macroscopic limits of individual-based models for motile cell populations with volume exclusion" Phys. Rev. E. 86, 031903, doi:10.1103/PhysRevE.86.031903

P.K. Maini, R. Anguelov (eds), S. Markov (eds)
Foreword Special Issue" Mathemathical Methods and Models in Biosciences" Comput. Math. Appl. 64, 163, doi:
August 2012

C.A. Yates, R.E. Baker, R. Erban, P.K. Maini
"Going from microscopic to macroscopic on nonuniform growing domains" Phys. Rev. E. 86, 021921, doi:10.1103/PhysRevE.86.021921

J.L. Aragon, R.A. Barrio, T.E Woolley, R.E. Baker, P.K. Maini
"Nonlinear effects on Turing patterns: Time oscillations and chaos" Phys. Rev. E. 86, 026201, doi: 10.1103/PhysRevE.86.026201

L. Heaton, E. López, P. K. Maini, M. D. Fricker, and N. S. Jones
"Advection, diffusion, and delivery over a network" Phys. Rev. E, Volume 86, Issue 2, doi: 10.1103/PhysRevE.86.021905

Y. R. Wu, L. Huaccho Huatuco, G. Frizelle, J. Smart
"A method for analysing operational complexity in supply chains" Journal of the Operational Research Society, volume 64, issue 10, doi: 10.1057/jors.2012.63

B. E. Landon, N. L. Keating, M. L. Barnett, J.-P. Onnela, S. Paul, A. J. O’Malley, N. A. Christakis
"Variation in patient-sharing networks of physicians across the United States" JAMA 308 (3), 265, doi: 10.1001/jama.2012.7615

T. Vlahovic, S. Roberts, R. Dunbar
"Effect of duration and laughter on subjective happiness within different modes of communication" J. Comp. Med. Commun. 17: 436-450, doi: 10.1111/j.1083-6101.2012.01584.x

Fuentes, M. A., A. Gerig, and J. Vicente, "Non-Gaussian Price Dynamics" Batten, J. A. and N. Wagner (eds), Derivative Securities Pricing and Modelling (Emerald, United Kingdom, 2012)
June 2012

T. Caruso, M. C. Rillig, D. Garlaschelli
"On the application of network theory to arbuscular mycorrhizal fungi-plant interactions: the importance of basic assumptions" New Phytologist 194: 891-894, doi: 10.1111/j.1469-8137.2012.04163.x
June 2012

B. Obara, V. Grau, M. D. Fricker
"A bioimage informatics approach to automatically extract complex fungal networks" Bioinformatics, 28 (18): pp2374-2381, doi: 10.1093/bioinformatics/bts364

R. Dunbar
"Social cognition on the Internet: testing constraints on social network size" Phil. Trans. R. Soc. Lond. 367B: 2192-2201 Doi: 10.1098/rstb.2012.012

J. Powell, P. Lewis, N. Roberts, M. Gracia-Fińana, R. Dunbar
"Orbital prefrontal cortex volume predicts social network size: an imaging study of individual differences in humans" Proc. R. Soc, Lond 279B, doi: 10.1098/rspb.2011.2574

N. F. Wymbs, D. S. Bassett, P. J. Mucha, M. A. Porter, S. T. Grafton
"Differential recruitment of the sensorimotor putamen and frontoparietal cortex during motor chunking in humans" Neuron, Vol. 74, No. 5:936-946, doi: 10.1016/j.neuron.2012.03.038

A. Sutcliffe, R. Dunbar, J. Binder
"Relationships and the social brain: Integrating psychological and evolutionary perspectives" Brit. J. Psychol. 103: 149-168, doi: 10.1111/j.2044-8295.2011.02061.x
May 2012

R. Dunbar
"Bridging the bonding gap: the transition from primates to humans" Phil. Trans. R. Soc. Lond. 367B: 1837-1846, doi: 10.10.98/rstb.2011.0217

T.E. Woolley, R.E. Baker, E.A. Gaffney, P.K. Maini, S. Seirin-Lee
"Effects of intrinsic stochasticity on delayed reaction-diffusion patterning systems"Phys. Rev. E. 85, 051914, doi:10.1103/PhysRevE.85.051914

R. Dunbar
"Networks past and present (with commentaries)" Cliodynamics 3: 00-00

L. Heaton, E. López, P. K. Maini, M. D. Fricker, and N. S. Jones
"Analysis of fungal networks" Fungal Biology Reviews, Vol. 26, Issue 1, doi: 10.1016/j.fbr.2012.02.001
April 2012

Vasyl Palchykov, Kimmo Kaski, Janos Kertész, Albert-László Barabási, & Robin I. M. Dunbar
"Sex differences in intimate relationships" Scientific Reports Volume: 2, Article number:370 doi:10.1038/srep00370

P.K. Maini, R.E. Baker
"Developmental biology: mathematical modelling of development" In: eLS. John Wiley & Sons, Ltd: Chichester, doi: 10.1002/9780470015902.a0001067

S. Barry Cooper, P.K. Maini
"The mathematics of nature at the Alan Turing centenary" J.R. Soc. Interface Focus 2, 393-396, doi:10.1098/rsfs.2012.0018

R. Dunbar
"Instant Expert #21: Evolution of social networks"
New Scientist, volume 214, issue 2859

Charles D. Brummitta, Raissa M. D’Souza, E. A. Leicht
"Suppressing cascades of load in interdependent networks" Proceedings of the National Academy of Sciences, Volume: 109, Number 12, doi:10.1073/pnas.1110586109

J.-P. Onnela, N. A. Christakis
"Spreading paths in partially observed social networks" Physical Review E, Vol. 85 No. 036106, doi: 10.1103/PhysRevE. 85.036106

E. López and L. A. Braunstein
"Disorder induced limited path percolation" Europhysics Letters vol 97, 66001, doi:10.1209/0295-5075/97/66001

M. L. Barnett, N. A. Christakis, A. J O’Malley, J.-P. Onnela, N. L. Keating, B E. Landon
"Physician patient-sharing networks and the cost and intensity of care in US hospitals" Medical Care 50 (2), 152, doi: 10.1097/MLR.0b013e31822dcef7
February 2012

R. Dunbar, A. Suttcliffe
"Social Complexity and Intelligence. In: J. Vonk & T. Shackleford (eds) Oxford Handbook of Comparative Evolutionary Psychology" Oxford University Press, doi: 10.1093/oxfordhb/9780199738182.013.0006
February 2012

M.P.H. Stumpf & M.A. Porter
"Critical truths about power laws" Science, Volume 335, Number 6069, pages 665-666, doi: 10.1126/science.1216142

J. P. Gleeson, S. Melnik, J. Ward, M. A. Porter, P. J. Mucha
"Accuracy of mean-field theory for dynamics on real-world networks" Physical Review E, vol. 85, No. 2: 026106, doi: 10.1103/PhysRevE.85.026106

P.K. Maini, T.E. Woolley, R.E. Baker, E.A. Gaffney, S. Seirin-Lee
"Turing's model for biological pattern formation and the robustness problem" J.R. Soc. Interface Focus, 2 487-496, doi: 10.1098/rsfs.2011.0113

T.E. Woolley, R.E. Baker, E.A. Gaffney, P.K. Maini
"Stochastic reaction and diffusion on growing domains: Understanding the breakdown of robust pattern formation" Phys. Rev. E.84, 0046216, 1-16, doi:10.1103/PhysRevE.84.046216
January 2012

V. Zlatic, D. Garlaschelli, G. Caldarelli
"Networks with arbitrary edge multiplicities" EPL 97: 28005, doi: 10.1209/0295-5075/97/28005

Luca Valori, Francesco Picciolo, Agnes Allansdottir, and Diego Garlaschelli
"Reconciling long-term cultural diversity and short-term collective social behavior" Proceedings of the National Academy of Sciences, Volume 109, Number 2, doi: 10.1073/pnas.1109514109

K. T. Macon, P. J. Mucha, M. A. Porter
"Community structure in the United Nations General Assembly" Physica A, Vol. 391, No. 1-2: 343-361, doi: 10.16/j.physa.2011.06.030

2011 -             Back 

A. Passarella, M. Conti, C. Boldrini, R. Dunbar,
"Modelling Inter-Contact Times in Social Pervasive Networks" MSWiM 2011 pp. 1-8, doi: 10.1145/2068897.2068955
November 2011

M. Burton-Chellew, R. Dunbar,
"Are Affines Treated as Biological Kin? A Test of Hughes’ Hypothesis" Current Anthropology 52: 741-746, doi:10.1086/661288
October 2011

T. Squartini, G. Fagiolo, D. Garlaschelli,
"Randomizing World Trade. II. A Binary Network Analysis" Phys. Rev. E 84: 046117, doi:10.1103/PhysRevE.84.046118

T. Squartini, G. Fagiolo, D. Garlaschelli,
"Randomizing World Trade. I. A Binary Network Analysis" Phys. Rev. E 84: 046117, doi:10.1103/PhysRevE.84.046117

Serguei Saavedra, Jordi Duch, Brian Uzzi,
"Tracking Traders' Understanding of the Market Using e-Communication Data" PLoS One, Volume 6, Issue 10, e26705, doi:10.1371/journal.pone.0026705

C. Venkataraman, T. Sekimura, E.A. Gaffney, P.K. Maini
"Modeling Parr-Mark Pattern Formation During the Early Development of Amago Trout"> Phys. Rev. E. 84, 041923, 1-13, doi: 10.1103/PhysRevE.84.041923

Serguei Saavedra, Daniel B. Stouffer, Brian Uzzi, Jordi Bascompte
"Strong Contributors to Network Persistence Are the Most Vulnerable to Extinction" Nature, Volume 478, pages 233-235, doi: 10.1038/nature10433

T.E. Woolley, R.E. Baker, E.A. Gaffney, P.K. Maini
"Influence of Stochastic Domain Growth on Pattern Nucleation for Diffusive Systems with Internal Noise" Phys. Rev. E, 84, 041905, 1-13, doi:10.1103/PhysRevE.84.041905

S. Roberts, R. Dunbar,
"Communication in Social Networks: Effects on Kinship, Network Size and Emotional Closeness" Pers. Relationships 18: 439-452, doi: 10.1111/j.1475-6811.2010.01310.x
September 2011

R. Dunbar,
"Constrains on the Evolution of Social Institutions and Their Implications for Information Flow" J. Institutional Econ. 7: 345-371,
September 2011

Jian-Guo Liu, Tao Zhou, Qiang Guo
"Information Filtering via Biased Heat Conduction " Physical Review E, Volume 84, Issue 3, doi:10.1103/PhysRevE.84.037101

A.M. Soto, C. Sonnenschein, P.K. Maini
"Systems Biology and Cancer" Prog. Biophys. Mol. Biol., 106(2), 337-339, doi: 10.1016/j.pbiomolbio.2011.07.009
August 2011

Austin Gerig
"Universal Laws and Economic Phenomena" Complexity, Volume 17, No 1, pages 9-12, doi: 10.1022/cplx.20371

T.E. Woolley, R.E. Baker, E.A. Gaffney, P.K. Maini
"Power Spectra Methods for a Stochastic Description of Diffusion on Deterministically Growing Domains" Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Aug;84(2 Pt 1):021915, doi:10.1103/PhysRevE.84.021915

D. J. Fenn, M A. Porter, S. Williams, M. McDonald, N. F. Johnson, N. S. Jones
"Temporal Evolution of Financial Market Correlations" Physical Review E, Volume 84, No 2: 026109, doi:10.1103/PhysRevE.84.026109

A. L Traud, E. D Kelsic, P. J. Mucha, M. A. Porter
"Comparing Community Structure to Characteristics in Online Collegiate Social Networks" SIAM Review, Vol. 53, No. 3: 526-543, doi: 10.1137/080734315

T. Squartini, D. Garlaschelli
"Analytical Maximum-Likelihood Method to Detect Patterns in Real Networks" New Journal of Physics 13: 083001, doi: 10.1088/1367-2630/13/8/083001

A. Mislove, S. Lehmann, Y.-Y. Ahn, J.-P. Onnela, J. N. Rosenquist
"Understanding the Demographics of Twitter Users" Proceedings of the Fifth International AAAI Conference on Weblogs and Social Media (ICWSM'11), Barcelona, Spain (2011).

Neil Johnson, Spencer Carran, Joel Botner, Kyle Fontaine, Nathan Laxague, Philip Nuetzel, Jessica Turnley, Brian Tivnan
"Pattern in Escalations in Insurgent and Terrorist Activity" Science, Volume 333, No 6038, pages 81-84, doi:10.1126/science.1205068

David M.D. Smith, J.-P. Onnela, Ch. F. Lee, M.D. Fricker, N.F. Johnson
"Network Automata: Coupling Structure and Function in Dynamic Networks" Advances in Complex Systems, Vol. 14, No.3 (2011) pages 317-339, World Scientific Publishing Company, doi:10.1142/S0219525911003050
June 2011

Jian-Guo Liu, Qiang Guo, Yi-Cheng Zhang
"Information Filtering via Weighted Heat Conduction Algorithm" Physica A: Statistical Mechanics and its Applications, Volume 390, Issue 12, pages 2414-2420, doi:10.1016/j.physa.2011.02.023

Max A. Little, Nick S. Jones
"Generalized methods and solvers for noise removal from piecewise constant signals. II. New methods " Proceedings of the Royal Society A, doi: 10.1098/rspa.2010.0674

Markus Schwarzländer, David C. Logan, Mark D. Fricker, Lee J. Sweetlove
"The Circularly Permuted Yellow Fluorescent Protein cpYFP That Has Been Used as a Superoxide Probe is Highly Responsive to pH but not Superoxide in Mitochondria: Implications for the Existence of Superoxide ‘Flashes’" Biochemical Journal 437, pp 381-387, doi:10.1042/BJ20110883

A.Hackett, S. Melnik, and J. P. Gleeson
"Cascades on a Class of Clustered Random Networks" Phys. Rev. E 83, 056107, doi: 10.1103/PhysRevE.83.056107

A. Hamadeh, M.A.J. Roberts, E. August, P.E. McSharry, P.K. Maini, J.P. Armitage, A. Papchristodoulou
"Feedback Control Architecture & the Bacterial Chemotaxis Network" PLoS Computational. Biology., 7 (15 pages), doi:10.1371/journal.pcbi.1001130

S. Roberts, R. Dunbar
"The Cost of Family and Friends: An 18-Month Longitudinal Study of Relationship Maintenance and Decay" Evol. Human Behav. 32: 186-197,

T. Pollet, S. Roberts, R. Dunbar
"Use of Social Network Sites and Instant Messaging Does Not Lead to Increase Offline Network Size, or to Emotionally Closer Relationships with Offline Network Members" Cyberpsych. Behav. Soc. Net. 14: 253-258, doi: 10.1089/cyber.2010.0161
April 2011

.V. Plikus, R.E Baker, C.C. Chen, C. Fare, D. de la Cruz,T. Andl, P.K. Maini, S.E. Miller, R. Widelitz, C.M. Chuong
"Self-Organizing & Stochastic Behaviors During the Regeneration of Hair Stem Cells" Science Vol. 332, no. 6029, pp. 586-589, doi: 10.1126/science.1201647

E. A. Leicht
"The Role of Interacting Network Structure. In: Applications of Network Theory: from Mechanisms to Large-Scale Structure (conference paper)" Nordic Institute for Theoretical Physics, Stockholm, Sweden

Danielle S. Bassett, Nicholas F. Wymbs, Mason A. Porter, Peter J. Mucha, Jean M. Carlson, Scott T Grafton
"Dynamic Reconfiguration of Human Brain Networks During Learning" Proceedings of the National Academy of Sciences, Vol. 118, No. 18: 7641-7646, doi:10.1073/pnas.1018985108

Holger Perfahl, Helen M. Byrne, Tingan Chen, Veronica Estrella, Tomás Alarcón, Alexei Lapin, Robert A. Gatenby, Robert J. Gillies, Mark C. Lloyd, Philip K. Maini, Matthias Reuss, Markus R.Owen
"Multiscale Modelling of Vascular Tumour Growth in 3D: the Roles of Domain Size & Boundary Conditions" PLoS ONE 6(4): e14790. doi:10.1371/journal.pone.0014790

J.W. Schofield, E.A. Gaffney, R.A. Gatenby, P.K. Maini
"The Gap Between Theory and Experiments" Journal of Theoretical Biology, Volume 274, Issue 1, doi:10.1016/j.jtbi.2011.01.012

Jukka-Pekka Onnela, Samuel Arbesman, Marta C. González, Albert-László Barabási, Nicholas A. Christakis
"Geographic Constraints on Social Network Groups"PLoS ONE 6(4): e16939.


Peter Hedström, Yvonne Ĺberg
“Social Interaction and Youth Unemployment” Chapter in Analytical Sociology and Social Mechanisms, edited by Pierre Demeulenaere. ISBN-13: 9780521154352
March 2011

Sung-Won Cho, Sungwook Kwak, Thomas E. Woolley, Min-Jung Lee, Eun-Jung Kim, Ruth E. Baker, Hee-Jin Kim, Jeon-Soo Shin, Cheryll Tickle, Philip K. Maini, Han-Sung Jung
"Interactions Between Shh, Sostdc1 and Wnt Signaling and a New Feedback Loop for Spatial Patterning of the Teeth" Development, 138, pp 1807-1816 doi: 10.1242/dev.056051

Sergey Melnik, Adam Hackett, Mason A. Porter, Peter J. Mucha, James P. Gleeson
"The Unreasonable Effectiveness of Tree-Based Theory for Networks with Clustering" Physica Review E 83, 036112 (2011), Volume 83, Issue 3, doi: 10.1103/PhysRevE.83.036112

N.K. Martin, E.A. Gaffney, R.A. Gatenby, R.J. Gillies, I.F. Robey, P.K. Maini
"A mathematical Model of Tumour and Blood pHe Regulation: The HCO3-/CO2 Buffering System" Mathematical Biosciences, Volume 230, Issue 1, pp. 1-11. doi: 10.1016/j.mbs.2010.12.002

E. Leicht
"Interacting Networks: Formalism and Significance. In: Complex Networks: Dynamics on Networks" (conference paper),Statistical and Applied Mathematical Science Institute (SAMSI), North Carolina, USA

O. Curry, R. Dunbar
"Altruism in Networks: The Effect of Connections" Biol. Lett. 7: 345-371, doi:10.1098/rsbl.2010.12.02

P.J. Murray, A. Walter, A.G. Fletcher, C.M. Edwards, M.J. Tindall, P.K. Maini
"Comparing a Discrete and Continuum Model of the Intestinal Crypt" Physical Biology, Volume 8, Number 2, doi: 10.1088/1478-3975/8/2/026011

S.Saavedra, K. Hagerty, B. Uzzi
"Synchronicity, Instant Messaging and Performance Among Financial Traders" PNAS 108: 5296-5301, doi: 10.1073/pnas.1018462108

Peter Hedström, Petri Ylikoski
"Analytical Sociology" Chapter in The SAGE Handbook of the Philosophy of the Social Sciences, edited by Ian Jarvie and Jesús Zamora-Bonilla. ISBN: 9781847874009
February 2011

G. Klingbeil, R. Erban, M Giles, P.K. Maini
"STOCHSIMGPU: Parallel Stochastic Simulation for the Systems Biology Toolbox 2 for MATLAB" Bioinformatics, Volume 27, pp.1170-1171, doi: 10.1093/bioinformatics/btr068

A. L. Traud, P. J. Mucha, M. A. Porter,
"Social Structure of Facebook" Physica A, Volume 391, No 16:4165-4180, doi: org/10.2139/ssrn.1470768

T. Pollet, S. Roberts, R. Dunbar
"Extraverts Have Larger Social Network Layers but Do Not Feel Emotionally Closer to Individuals at Any Layer" J. Indiv. Diffs. 32: 161-169, doi: 10.1027/1614-0001/a000048
January 2011

Haoran Wen, E. A. Leicht, Raissa M. D’Souza
"Improving Community Detection in Networks by Targeted Node Removal " Physical Review E, Volume 83, Issue 1, doi: 10.1103/PhysRevE.83.016114

2010 -             Back 

Peter Hedström, Rebeca Ibarra
“On the contagiousness of non-contagious behavior: The case of tax avoidance and tax evasion” Chapter in The Benefit of Broad Horizons: Intellectual and Institutional Preconditions for a Global Social Science, edited by Hans Joas and Barbro Klein. Leiden: Brill

Ricardo Pires das Neves, Nick S. Jones, Lorena Andreu, Rajeev Gupta, Tariq Enver, Francisco J. Iborra
"Connecting Variability in Global Transcription Rate to Mitochondrial Variability " PLoS Biology 8(12): e1000560. (2010) doi:10.1371/journal.pbio.1000560

Serguei Saavedra, David Smith, Felix Reed-Tsochas
"Cooperation under Indirect Reciprocity and Imitative Trust" PLoS ONE 5(10): e13475. doi:10.1371/journal.pone.0013475 (pdf)

Jukka-Pekka Onnela, Felix Reed-Tsochas
"Spontaneous emergence of social influence in online systems" Proceedings of the National Academy of Sciences USA vol. 107 no. 43, pp. 18375 - 18380, doi: 10.1073/pnas.0914572107

Luis Bettencourt, Geoffrey West
"A unified theory of urban living" Nature Volume: 467 , Pages: 912–913 : doi:10.1038/467912a (pdf)

Mariano Beguerisse Diaz, Mason A. Porter, Jukka-Pekka Onnela
"Competition for Popularity in Catalog Networks" Chaos 20, 043101, DOI:org/10.1063/1.3475411

Ramasco, J.J., de La Lama, M.S., López, E., Boettcher, S.,
"Optimization of transport protocols with path-length constraints in complex networks" Physical Review E 82, 036119, DOI:10.103/PhysRevE.82.036119

Vishwesha Guttal, Iain D. Couzin
"Information Use and the Evolution of Collective Migration" Proceedings of the National Academy of Sciences USA, vol 107 no 37, pp. 16172-16177. DOI: 10.1073/pnas.1006874107

Cédric Sueur, Jean-Louis Deneubourg, Odile Petit, Iain D. Couzin
"Differences in Nutrient Requirements Imply a Non-Linear Emergence of Leaders in Animal Groups" PLoS Computational Biology 6(9): e1000917. DOI: 10.1371/journal.pcbi.1000917

Sepideh Bazazi, Pawel Romanczuk, Thomas S. Deisboeck., Lutz Schimansky-Geier, Joseph J. Hale, Gabriel A. Miller, Gregory A. Sword, Stephen J. Simpson, Iain D. Couzin
"Nutritional State and Collective Motion: From Individuals to Mass Migration" Proceedings of the Royal Society of London Series B. DOI:10.1098/rspb.2010.1447

Stefano Battistion, James B. Glattfelder, Diego Garlaschelli, Fabrizio Lillo, Guido Caldarelli
"The Structure of Financial Networks" Chapter in Network Science: Complexity In Nature and Technology (edited by Ernesto Estrada, Maria Fox, Desmond J. Higham, Gian-Luca Oppo), Springer ISBN: 978-1-84996-395-4. DOI: 10.1007/978-1-84996-396—1_7

Carlos Escudero, Christian Yates, Jerome Buhl, Iain D. Couzin, Radek Erban, Ioannis Kevrekidis, Philip K. Maini
"Ergodic Directional Switching in Mobile Insect Groups" Physical Review E, 011926, Vol. 82, Issue 1, DOI: 10.1103/PhysRevE.82.011926

Anna C.F. Lewis, Nick S. Jones, Mason A. Porter, Charlotte M. Deane
"The Function of Communities in Protein Interaction Networks at Multiple Scales" BMC Systems Biology 2010, 4:100, DOI:10.1186/1752-0509-4-100

Peter Hedström, Petri Ylikoski
"Casual Mechanism in the Social Science" Annual Review of Sociolog, Vol. 36, pp. 49-67. DOI:10.1146/annurev.soc.012809.102632
June 2010

Lynne Boddy, Jonathan Wood, Emily Redman, Juliet Hynes, Mark D. Fricker
"Fungal Network Responses to Grazing" Fungal Genetics and Biology, Vol. 47, Issue 6, June 2010, Pages 522-530, DOI:10.1016/j.fgb.2010.01.006
June 2010

Sumeet Agarwal, Charlotte M. Deane, Mason A. Porter, Nick S. Jones
"Revisiting Date and Party Hubs: Novel Approaches to Role Assignment in Protein Interaction Networks" PLoS Computational Biology, June 2010, Vol. 6, Issue 6, e1000817
June 2010

Luke L. M. Heaton, Eduardo López, Philip K. Maini, Mark D. Fricker, Nick S. Jones
"Growth-induced Mass Flow in Fungal Networks" Proceedings of the Royal Society 2010, doi: 10.1098/rspb.2010.0735

Peter J. Mucha, Thomas Richardson, Kevin Macon, Mason A. Porter, Jukka-Pekka Onnela
"Community Structure in Time-Dependent, Multiscale, and Multiplex Networks" Science Vol. 328. no. 5980, pp. 876 - 878, DOI: 10.1126/science.1184819

Phillip P. A. Staniczenko, Owen T. Lewis, Nick S. Jones, Felix Reed-Tsochas
"Structural Dynamics and Robustness of Food Webs" Ecology Letters,(2010) Volume 13, Issue 7, pp. 793-935, DOI: 10.1111/j.1461-0248.2010.01485.x

M. A. Serano, Diego Garlaschelli, M Boguna, M.I. Loffredo "The World Trade Web: Structure, Evolution and Modelling" Chapter in The Encyclopaedia of Life Support Systems, EOLSS, UNESCO

Iain D. Couzin "Complex Systems: An Informative Itinerary" Science, Vol. 328, No. 5977, pp430, DOI: 10.1126/science.1187332

Johanna I. Stamper, Markus R. Owen, Philip K. Maini, Helen M. Byrne "Oscillatory Dynamics in a Model of Vascular Tumour Growth - Implications for Chemotherapy" Biology Direct, 5 (27). pp. 1-17. DOI: 10.1186/1745-6150-5-27

Matteo Barigozzi, Giorgio Fagiolo, Diego Garlaschelli "Multinetwork of international trade: A commodity-specific analysis" Physical Review E 81, 046104 (2010), DOI: 10.1103/PhysRevE.81.046104

Chiu Fan Lee "Fluctuation-induced Collective Motion: A Single-particle Density Analysis" Physical Review E81, 031125 (2010), DOI: 10.1103/PhysRevE.81.031125

Max. A. Little, Nick S. Jones "Sparse Bayesian Step-Filtering for High-Throughput Analysis of Molecular Machine Dynamics" 2010 IEEE International Conference on Acoustics, Speech and Signal Processing. ICASSP 2010 Proceedings Dallas, Texas, USA. pp. 4162-4165

Serguei Saavedra, Scott Powers, Trent McCotter, Mason A. Porter, Peter J. Mucha "Mutually-Antagonistic Interactions in Baseball Networks" Physica A, Vol. 389, No. 5, pp. 1131-1141. DOI: doi:10.1016/j.physa.2009.10.038

Atsushi Tero, Seiji Takagi, Tetsu Saigusa, Kentaro Ito, Dan P. Bebber, Mark D. Fricker,
Kenji Yumiki, Ryo Kobayashi, Toshiyuki Nakagaki (2010) "Rules for Biologically Inspired Adaptive Network Design ". Science, Vol. 327. no. 5964, pp. 439 - 442. DOI: 10.1126/science.1177894

2009 -             Back 

Colin Torney Zoltan Neufeld, Iain D. Couzin “Context-Dependent Interaction Leads to Emergent Search Behavior in Social Aggregates” Proceedings of the National Academy of Sciences USA, Vol. 106, No. 52 22055-22060, DOI: 10.1073/pnas.0907929106

Juan Camilo Bohorquez, Sean Gourley, Alexander R. Dixon, Michael Spagat Neil F. Johnson (2009) “Common ecology quantifies human insurgencyNature, Vol 462, 17 December 2009. DOI:10.1038/nature08631

Riitta Toivonen, Lauri Kovanen, Mikko Kivelä, Jukka-Pekka Onnela, Jari Saramäki, Kimmo Kaski “A Comparative Study of Social Network Models: Network Evolution Models and Nodal Attribute Models” Social Networks, Volume 31, Issue 4, pp. 240-254. DOI: 10.1016/j.socnet.2009.06.004
October 2009

Christopher Edling, Peter Hedström “Tocqueville and Analytical Sociology” in A Life in Sociology, Raymond Bound, edited by Mohamed Cherkaoui, Peter Hamilton. Oxford: The Bardwell Press. ISBN -13: 978-1-905622-18-4
October 2009

Mark AJ Roberts, Elias August, Abdullah Hamadeh, Philip K Maini, Patrick E McSharry, Judith P Armitage, Antonis Papachristodoulou “A Model Invalidation-Based Approach for Elucidating Biological Signalling Pathways, Applied to the Chemotaxis Pathway in R. sphaeroides” BMC Syst Biol. 2009; 3: 105, DOI: 10.1186/1752-0509-3-105

Blazej Ruszczycki, Ben Burnett, Zhenyuan Zhao, Neil F. Johnson “Relating the Microscopic Rules in Coalescence-fragmentation Models to the Macroscopic Cluster Size Distributions which Emerge” The European Physical Journal B - Condensed Matter and Complex Systems, Volume 72, Number 2, pp. 289-302. DOI: 10.1140/epjb/e2009-00354-5

Chiu Fan Lee, James Loken, Létitia Jean, David J. Vaux “Elongation Dynamics of Amyloid Fibrils: A Rugged Energy Landscape Picture” Physical Review E80, 041906 (2009), DOI: 10.1103/PhysRevE.80.041906

Lee, C. F., “Self-Assembly of Protein Amyloids: A Competition Between Amorphous and Ordered AggregationPhysical Review E, Volume 80, Issue 3, DOI:10.1103/PhysRevE.80.031922

Richardson, T., Mucha, P. J., Porter, M. A, “Spectral Triartitioning of NetworksPhysical Review E, Volume 80, Number 3, DOI:10.1103/PhysRevE.80.036111

Simpson, S.J., Raubenheimer, D., Charleston, M.A., Clissold, F.J., Couzin, I.D., Clements, K.D., Coleman, R.A., Dussutour, A., Foley, W., Forbey, J., Glaze, E., Gordon, I.J., Hanan, J., Hochuli, D., Kearney, M.R., McArthur, C., Poore, A.G.B., Sword, G.A., Wallis, I.R.  “Modelling Nutritional Interactions: From Individuals to CommunitiesTrends in Ecology & Evolution, DOI:10.1016/j.tree.2009.06.012

Fenn, D.J., Porter, M.A., McDonald, M., Williams, S., Johnson, N. F, Jones, N. S.  “Dynamic Communities in Multichannel Data: An Application to the Foreign Exchange Market During the 2007–2008 Credit CrisisChaos, Volume 19, Issue 3, pp. 033119-033119-8, DOI: 10.1063/1.3184538

Fricker, M.D., Boddy, L. Nakagaki, T. Bebber, D.PAdaptive Biological Networks” in “Adaptive Networks: Theory” Models and Applications by T. Gross, T., Sayama, H. (Editors), pp. 51-70, ISBN: 9783640000000 DOI:10.1007/978-3-642-01284-6

Nabet, B, Leonard, N.E., Couzin, I.D., Levin, S.A “Dynamics of Decision-Making in Animal Group MotionJournal of Nonlinear Science, Volume 19, Number 4, DOI:10.1007/s00332-008-9038-6

Hedström, P., Bearman, P. (Eds) “Oxford Handbook of Analytical Sociology” Oxford University Press
August 2009

van Leeuwen, I. M. M.,  Mirams, G. R., Walter, A., Fletcher, A., P. Murray, P., Osborne, J., Varma, S., Young, J. Cooper, B. Doyle, Pitt-Francis,  J.,  Momtahan, L.,  Pathmanathan,  P., Whiteley, J. P.
S. J. Chapman,  D. J. Gavaghan, O. E. Jensen, J. R. King, Maini, P. K.,  Waters, S. L.,  Byrne, H. M.
An Integrative Computational Model for Intestinal Tissue RenewalCell Proliferation, Volume 42, pp. 617–636, DOI:10.1111/j.1365-2184.2009.00627.x

Nourdin, I.,  Peccati, G., Reinert, G.Second Order Poincaré Inequalities and CLTs on Wiener SpaceJournal of Functional Analysis, Volume 257, Issue 2, pp. 593-609

Daugherty D., Roque-Urrea T., Urrea-Roque J., Troyer J., Wirkus S., Porter M. A.
Mathematical Models of Bipolar DisorderCommunications in Nonlinear Science and Numerical Simulations,  Volume 14, Number 7, pp. 2897-2908, July 2009, DOI:10.1016/j.cnsns.2008.10.027
July 2009

Johnson, N.F., Xu, Ch., Zhao, Z., Ducheneaut, N., Yee, N., Tita, G., Hui P.M. “Human Group Formation in Online Guilds and Offline Gangs Driven by a Common Team DynamicPhysical Review E, Volume79, Issue 6, DOI:10.1103/PhysRevE.79.066117

Pitt-Francis, J., Pathmanathan, P., Bernabeu, M. O.,Bordas, R., Cooper, J., Fletcher, A G., Mirams, G R., Murray, P. J., Osbourne, J.,  Walter, A., Chapman, S. J., Garny, A., van Leeuwen, I. M. M., Maini, P. K., Rodriguez , B., Waters, S L ., Whiteley, J. P.,Byrne, H. M., Gavaghan, D. J. “Chaste: A Test-Driven Approach to Software Development for Biological ModellingComputer Physics Communications, Volume180, pp2452–2471, DOI:10.1016/j.cpc.2009.07.019   
June 2009

Smith, D.M.D., Onnela, J.-P, Jones, N.S, Master-Equation Analysis of Accelerating Networks
Physical Review E, Volume 79, Issue 5, DOI: 10.1103/PhysRevE.79.056101

Kumpula J. M., Onnela J.-P., Saramäki, J., Kertész, J., Kaski, K.  “Model of Community Emergence in Weighted Social NetworksComputer Physics Communications, Volume 180, Issue 4, pp. 517-522, DOI: 10.1016/j.cpc.2008.12.016
April 2009   

Owen, M.R., Alarcon, T., Maini, P.K., Byrne, H.M. “Angiogenesis and Vascular Remodelling in Normal and Cancerous TissuesJournal of Mathematical Biology, 58 (4-5), Volume 58, Numbers 4-5, pp. 481-844, DOI:10.1007/s00285-008-0213-z
April 2009

Dyer, J.R.G., Johansson, A., Helbing, D., Couzin, I.D. , Krause, J. (2009)  “Leadership, consensus decision making and collective behaviour in human crowds”,  Philosophical Transactions of the Royal Society of London, Series B 364, 781-789

Barrio, R.A., Baker, R.E., Vaughan JR. B., Tribuzy, K., de Carvalho, M.R., Bassanezi, R., Maini, P.K. (2009) "Modeling the skin pattern of fishes". Phys. Rev. E., 79, 031908-1-031908-11.

Conradt, L., Rober, T.J., Couzin, I.D. and Krauxe, J. (2009  “Leading “according-to-need” in self-organising groups”,  American Naturalist  173, 304-312

Lagorio, C., Migueles, M.V.,  Braunstein, L.A.,  López, E., Macri, P.A “Effect of Epidemic Threshold Definition on Disease Spread Statistic” Physica A: Statistical Mechanics and its Applications, Volume 388, Issue 5, pp. 755-763, DOI:10.1016/j.physa.2008.10.045

August, E., Papachristodoulou A. “Efficient, Sparse Biological Network Determination
BMC Systems Biology, DOI:10.1186/1752-0509-3-25

Onnela J.-P., Töyli J., and Kaski K.  “Decimalization and Asset Returns
Physica A: Statistical Mechanics and its Applications, Volume 388, Issue 4, pp. 441-454,
DOIi: 10.1016/j.physa.2008.10.014

Yates, C.A.,  Erban, R., Escudero, C., Couzin, I.D., Buhl, J., Kevrekidis, I.G., Maini, P.K. & Sumpter, D.J.T. (2009)  “Inherent noise can facilitate coherence in collective swarm motion”,  Proceedings of the National Academy of Sciences USA 106(14), 5464-5469.

Deisboeck, T. S. & Couzin, I.D. (2009)  “Collective behavior in cancer cell populations”,  Bioessays  31 (2), 190-197

Onnela, J.-P., Johnson, N.F., Gourley, S., Reinert, G. and Spagat, M. (2009) "Sampling bias in systems with structural heterogeneity and limited internal diffusion". EPL, 85 28001. (Published online: 29th January 2009, DOI:10.1209/0295-5075/85/28001) (pdf)

Boddy, L., Hynes, J., Bebber, D.P., Fricker, M.D. “Saprotrophic Cord Systems: Dispersal Mechanisms in Space and TimeMycoscience 50, Volume 50, Number 1, pp. 9-19, DOI:10.1007/s10267-008-0450-4

Saavedra, S., Reed-Tsochas, F., and Uzzi, B., (2009) "A simple model of bipartite cooperation for ecological and organizational networks", Nature 457, 463-466. (Advance Online Publication: 3rd December 2008, DOI:10.1038/nature07532)
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Atkinson,Q. D., Gray, R.D., Drummond, A. J. “Bayesian Coalescent Inference of Major Human mtDNA  Haplogroup Expansions in AfricaProceedings of the Royal Society B, Volume 276, Number 1655,
pp. 367-373, DOI:10.1098/rspb.2008.0785

Staniczenko, P. A., Lee, C. F., and Jones, N. S., (2009) "Rapidly detecting disorder in rhythmic biological signals: A spectral entropy measure to identify cardiac arrhythmias", Physical Review E, 79 011915. (pdf)

Romanczuk, P., Couzin, I.D. & Schimansky-Geier, L. (2009) Collective motion of animal groups due to escape and pursuit behaviorPhysical Review Letters 102, 010602.

Hedström, P., Wittrock, B. (Eds) “The Frontiers of SociologyBrill 2009

2008 -             Back 

Hedström, P., “Studying Mechanisms to Strengthen Causal Inferences in Quantitative Research” Pp. 319 - 335 in J. M. Box-Steffensmeier, H. E. Brady and D. Collier (Eds.) in The Oxford Handbook of Political Methodology. Oxford: Oxford University Press. Print Publication Date 2008. Published to Oxford Handbook online September 2009, DOI:10.1093/oxfordhb/9780199286546.003.001

August, E., Papachristodoulou, A., Recht, B., Roberts, M. A. J., Jadbabaie, A.“Determining Interconnections in Biochemical Networks Using Linear Programming” In Proceedings of the 47th IEEE Conference on Decision and Control, CDC, DOI:10.1109/CDC.2008.4739286

Couzin, I.D.  (2009) Collective cognition in animal groupsTrends in Cognitive Sciences 13 (1), 36-43.

Rotheray, T.D., Jones, T.H., Fricker, M.D. and Boddy, L. (2008) “Grazing alters network architecture during interspecific mycelial interactions.” Fungal Ecology 1 124-132. doi:10.1016/j.funeco.

Hedström, P., Liu, K-Y., Nordvik, M. “Interaction Domains and Suicides: A Population-Based Panel Study of Suicides in the Stockholm Metropolitan Area, 1991-1999Social Forces, Volume 87, Number 2, pp. 713-740, E-ISSN: 1534-7605 Print ISSN: 0037-7732 DOI:10.1353/sof.0.0130
December 2008

Sumpter, D.J.T., Krause, J., James, R., Couzin, I.D. & Ward, A. (2008) “Consensus decision-making by fish”.  Current Biology 18 (22), 1773-1777.

Yates, C.A.,  Erban, R., Escudero, C., Couzin, I.D., Buhl, J., Kevrekidis, I.G., Maini, P.K. & Sumpter, D.J.T. (2009) Inherent noise can facilitate coherence in collective swarm motionProceedings of the National Academy of Sciences USA 106 (14), 5464-5469.

Saavedra, S., Reed-Tsochas, F., and Uzzi, B., (2008) "Asymmetric disassembly and robustness in declining networks", Proceedings of the National Academy of Sciences (PNAS), 105, 16466-16471.

Owen, M.R., Alarcon, T., Maini, P.K., Byrne, H.M., (2009) "Angiogenesis and vascular remodelling in normal and cancerous tissues", J. Math. Biol., 58, 689-721 (doi: 10.1007/s00285-008-0213-z)

Pastore y Piontti, A.L., La Rocca, C.E., Toroczkai, Z., Braunstein, L.A., Macri, P.A., and López, E., (2008) "Using relaxational dynamics to reduce network congestion", New Journal of Physics 10 093007 (pdf)

Eichelsbacher, P.,  Reinert, G, “Stein's Method for Discrete Gibbs Measures
The Annals of Applied Probability, Volume 18, Issue 4, pp. 1588-1618, DOI:10.1214/07-AAP0498

Johnson, N.F., Spagat, M., Gourley, S., Onnela, J., and Reinert, G., (2008) "Bias in Epidemiological Studies of Conflict Mortality", Journal of Peace Research: 45 (5) pp. 653-663.

Chen, P., Deane, C.M., and Reinert, G., (2008) "Predicting and Validating Protein Interactions Using Network Structure", PLoS Computational Biology: 4 (7) e1000118. (pdf)

Maini, P.KModelling Aspects of Solid Cancer Growth
Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology,  Volume 150, Issue 3, Supplement 1, p. S47, doi: doi:10.1016/j.cbpa.2008.04.027    

Tlalka, M., Bebber, D.P., Darrah, P.R., Watkinson, S.C., Fricker, M.D. *equal contribution
Quantifying Dynamic Resource Allocation Illuminates Foraging Strategy in Phanerochaete Velutina
Fungal Genetics and Biology, Volume 45, Issue 7, pp. 1111-1121, doi: 10.1016/j.fgb
July 2008

Sumpter, D.J.T., Couzin, I.D.,., Buhl, J., Biro, D., “Information Transfer in Moving Animal Groups
Theory in Biosciences, Volume 127, Number 2, pp. 177-186, doi: 10.1007/s12064-008-00401
June 2008

Hedström, P. and Stern, C., (2008) "Rational choice and sociology", Pp. 872-877 in The New Palgrave Dictionary of Economics. Second Edition. Edited by S.N. Durlauf and L.E. Blume. Palgrave Macmillan. (pdf)

Jones, N. (2008) "Using the memories of multi-scale machines to characterize complex systems", Physical Review Letters, 100, 208702.

Bazazi, S., Buhl, J., Hale, J.J., Anstey, M.L., Sword, G.A., Simpson, S.J., Couzin, I.D.
“Collective Motion and Cannibalism in Locust Migratory Bands”, Current Biology, Volume 18, Issue 10, pp. 735-739, DOI:10.1016/j.cub.2008.04.035

Ward, A.J., Sumpter, D.J.T., Couzin, I.D., Hart, P.J.B., Krause, J. 
Quorum Decision-Making Facilitates Information Transfer in Fish Shoals
PNAS, Volume 105, Number 19, pp. 6948-6953 , DOI:10.1073/pnas.0710344105 

Tlalka, M., Fricker, M.D., Watkinson, S.C. “Imaging Long Distance A-Aminoisobutyric Acid Transport  Dynamics During Resource Capture by Serpula Lacrymans”, Applied Environmental Microbiology, Volume 74, Number 9,pp. 2700-2708, DOI: 10.1128/AEM.02765-07
May 2008

McDonald, M., Suleman, O., Williams, S., Howison, S., Johnson, N. F. "Impact of Unexpected Events, Shocking News and Rumours on Foreign Exchange Market Dynamics", Phys. Rev. E 77, 046110 (2008).

Tlalka, M., Bebber, D.P., Darrah, P.R., Watkinson, S.C. and Fricker, M.D. (2008) “Quantifying dynamic resource allocation illuminates foraging strategy in Phanerochaete velutina.” Fungal Genetics and Biology 45 1111-1121 doi: 10.1016/j.fgb. *equal contribution

Das, A., Marko, M., Probst, A., Porter, M. A., Gershenson, C. “Neutral Net Model for Featured Word Extraction” in: “Unifying Themes in Complex Systems IV: Proceedings of the Fourth International Conference on Complex Systems”  by Ali A. Minai, Yaneer Bar-Yam (Editors), Springer-Verlag New York, LLC
April 2008

Bellomo, N.,  Li, N.K., Maini, P.KOn the Foundations of Cancer Modelling: Selected Topics, Speculations, & PerspectivesMathematical Models and Methods in Applied Sciences, Volume 18, Number  4 , pp. 593–646
April 2008

Maini, P.K., Byrne, H. M. , Leeuwen, I. M. M., Owen, M. R., Alarcon, T. “Multiscale Modelling of Solid Tumour Growth” in:Selected Topics in Cancer Modeling Birkhauser, Boston, USA, pp. 449-473, ISBN 978-0-8176-4712-4
April 2008

Calinescu, A. and Efstathiou, J. “Measures of Network Structure.” Encyclopedia of Networked and Virtual Organizations", edited by Goran D Putnik and Maria Manuela Cunha.

Smith, D.M.D., Lee, C.F., Onnela, J.-P., and Johnson, N.F. (2008) "Link-space formalism for network analysis", Physical Review E. 77 036112. (pdf)

Zhang, Y., Friend, A.J., Traud, A.L, Porter, M.A., Fowler, J.H. and Mucha, P.J. (2008) "Community structure in Congressional cosponsorship networks", Physica A 387 1705- 1712. (pdf)

Couzin, I.D, Dyer, J. R. G., Ioannou, C. C., Morrell, L. J., Croft, D. P., Waters, D. A., Krause, J. “Consensus Decision Making in Human Crowds”  Animal Behaviour  Volume 75, Issue 2, pp.461-470, DOI:10.1016/j.anbehav.2007.05.010
February 2008  

Couzin, I.D., Roditakis, E., Franks, N. R., & Charnley, A. K., “Effects of Lecanicillium Longisporum Infection on the Behaviour of the Green Peach Aphid Myzus Persicae”, Journal of Insect Physiology, Volume 54 Issue1, pp. 128-136, doi: 10.1016/j.jinsphys.2007.08.008
January 2008

Fricker, M.D., Lee, J.A., Boddy, L. and Bebber, D.P. (2008) "The Interplay Between Structure and Function in Fungal Networks" , Topologica1, 4

Hedström, P, Analytische Soziologie, VS Verlag für Sozialwissenschaften2008

Tlalka, M., Fricker, M.D. and Watkinson, S.C. (2008b) "Imaging long distance a-aminoisobutyric acid transport dynamics during resource capture by Serpula lacrymans", Applied Enviornmental Microbiology (in press).

Fricker, M.D., Lee, J.A., Bebber, D.P., Tlalka, M., Hynes, J., Darrah, P.R., Watkinson, S.C. and Boddy, L. (2008a) "Imaging complex nutrient dynamics in mycelial networks", Journal of Microscopy (in press).

2007 -             Back 

Kumpula, J.M., Onnela, J.-P., Saramäki, J., Kaski, K., and Kertész, J. (2007) "Emergence of communities in weighted networks", Physical Review Letters. 99, 228701. (pdf)

Callaghan, T., Mucha, P.J. and Porter, M.A. (2007) "Random Walker Ranking for NCAA Division I-A Football", American Mathematical Monthly 114:761-777. (pdf)

Bebber, D., Hynes, J., Darrah, P.R., Boddy, L. and Fricker, M.D. (2007) "Biological solutions to transport network design", Proceedings of the Royal Society. B 274 2307-2315. doi:10.1098/rspb.2007.0459. (pdf)

Porter, M.A., Mucha, P.J., Newman, M.E.J. and Friend, A.J. (2007) "Community structure in the United States House of Representatives", Physica A 386 414-438. (pdf)

Uzzi, B., Amaral, Luis. A. N., and Reed-Tsochas, F. (2007). "Small-world networks and management science research: a review", European Management Review 4, 77-91. (pdf)

Onnela, J.-P., Saramäki, J., Hyvönen, J., Szabó, G., Menezes, M. A. de., Kaski, K., Barabási, A.-L. and Kertész, J., (2007) "Analysis of a large-scale weighted network of one-to-one human communication", New Journal of Physics 9 : 179. (pdf)

Smith, D.M.D., Onnela, J.-P. and N.F. Johnson, (2007) “Accelerating Networks”, New Journal of Phyics. 9 181.

Chen, P., Deane, C.M., and Reinert, G., (2007) “A statistcal approach using network structure in the prediction of protein characteristics”, Bioinformatics. 23 17, pp. 2314-2321 (pdf).

Fricker, M.D., Boddy, L. and Bebber, D.P. (2007) "Network organisation of mycelial fungi". In: The Mycota. Vol VIII, Biology of the Fungal Cell (2nd Ed). Eds R.J. Howard and N.A.R. Gow. 2nd ed., 341 p ISBN: 978-3-540-70615-1. (pdf)

Onnela, J.-P., Saramäki, J., Hyvönen, J., Szabó, G., Lazer, D., Kaski, K., Kertész, J. and Barabási, A.-L. (2007) "Structure and tie strengths in mobile communication networks", Proceedings of the National Academy of Sciences (PNAS) 104, 7332-7336. (pdf)

Bebber, D.P., Tlalka, M., Hynes, J., Darrah, P.R., Ashford, A., Watkinson, S.C., Boddy, L., and Fricker, M.D. (2007). "Imaging complex nutrient dynamics in mycelial networks". In: G.M. Gadd (Ed). Fungi in the Environment. Cambridge University Press, Cambridge. ISBN 0521850290.

Fricker, M.D. Tlalka, M., Bebber, D., Takagi, S., Watkinson, S.C. and Darrah, P.R. (2007) "Fourier-based spatial mapping of oscillatory phenomena in fungi", Fungal Genetics and Biology 44 1077-1084. doi:10.1016/j.fgb.2007.02.012. (pdf)

Tlalka, M., Bebber, D., Darrah, P.R., Watkinson, S.C. and Fricker, M.D. (2007) "Emergence of self-organised oscillatory domains in fungal mycelial networks", Fungal Genetics and Biology 44 1085-1095. doi:10.1016/j.fgb.2007.02.013. (pdf)

Wu, Y., Frizelle G. and Efstathiou, J., (2007) “A Study on the Cost of Operational Complexity in Customer-Supplier Systems”, International Journal of Production Economics. 106, 217-229. (pdf)

Couzin, I.D. (2007) "Collective minds", Nature 455, 715.

Hedström, P., (2007) “Actions and Networks: Sociology that really matters (to me)”, Sociologica 1 (1) 1-18.
doi: 10.2383/24187.

Hedström, P., (2007) “Sociala pĺverkansprocesser.” Pp 125-146 in C. Edling and J. Rydgren (eds) Social Handling och Sociala Relationer. Stockholm: Natur & Kultur.

2006  -             Back 

Barbour, A. D. and Reinert, G. (2006) "Discrete small world networks", Electronic Journal of Probability 11, 1234.1283. (pdf)

Saavedra, S., Efstathiou, J. and Reed-Tsochas, F. (2007). "Identifying the underlying structure and dynamic interactions in a voting network", Physica A 377, 672-688. (pdf)

Couzin, I.D., James, R., Croft, D.P. & Krause, J. (2006) "Social organization and information transfer in schooling fish." in Fish Cognition and Behaviour eds.Brown C., Laland, K.N. & Krause, J.

Pratt, S.C., and Sumpter, D.J.T., "A tunable algorithm for collective decision-making", Proceedings of the National Academy of Sciences (PNAS) vol.103 no. 43, pp 15906-15910

Smith, D.M.D., and Johnson, N.F. (2006) "Predictability, Risk and Online Management in a Complex System of Adaptive Agents." in Econophysics and Sociophysics: Trends and Perspectives, Eds. B.K. Chakrabarti, A. Chakraborti, A. Chatterjee (Wiley-VCH, Berlin, 2006).

J. Jost, F. Reed-Tsochas and P. Schuster (Eds.) (2006). Towards a Science of Complex Systems, ECCS '06, Proceedings of the European Conference on Complex Systems 2006, European Complex Systems Society, ISBN 0-9554123-0-7.
Download Conference Proceedings (pdf)

Jarrett, T.C., Ashton, D.J., Fricker, M. and Johnson, N.F. (2006) "Interplay between function and structure in complex networks", Physical Review. E 74, 026116.

Goldstein, L. and Reinert, G. (2006) "Total Variation Distance for Poisson Subset Numbers", Annals of Combinatorics, vol 10, pp. 333--341. (pdf)

Hedström, P., (2006) “Explaining the growth patterns of social movements”. Pp. 111-26 in J. Elster et. al. (eds.) Understanding Choice, Explaining Behaviour. Oslo: Oslo University Press.

Nabet, B., Leonard, N.E., Couzin, I.D. & Levin, S.A.(2006) "Leadership in animal group motion: a bifurcation analysis", Proceedings of the 17th Symposium on Mathematical Theory of Networks and Systems (in press). (pdf)

Byrne, H.M., Alarcon, T., Owen, M.R., Murphy, J., and Maini, P.K.,(2006) "Modelling the response of vascular tumours to chemotherapy: a multiscale approach", Mathematical Models and Methods in Applied Sciences. 16(1), 1219-1241. (pdf)

Hedström, P., (2006) Anatomia del Sociale: Sui principi della sociologia analitica. Bruno Mondadori.

Hedström, P., (2006) “Explaining social change: An analytical approach.” Papers: Revista de Sociologia. 80: 73-95.

Buhl, J., Sumpter, D.J.T., Couzin, I.D., Hale, J., Despland, E., Miller, E. & Simpson, S.J. (2006) "From disorder to order in marching locusts", Science 312, 1402-1406.

Sivadasan, S., Efstathiou, J., Calinescu, A. and Huaccho Huatuco, L. (2006) “Advances on measuring the operational complexity of supplier–customer systems”, European Journal of Operational Research, Volume 171, Issue 1, Pages 208-226.

Johnson, N.F. Smith, D.M.D. and Hui , P.M. (2006) "Multi-agent complex systems and many-body physics", Europhysics Letters 74 (5), 923.

Couzin, I.D. (2006) "Behavioral ecology: social organization in fission-fusion societies", Current Biology 16, 169-171.

Smith, D.M.D. and Johnson, N.F. (2006) "Pair formation within multi-agent populations", Physica A 363, 151.

Gourley, S. and Johnson, N.F. (2006) "Effects of decision-making on the transport costs across complex networks", Physica A, 363, 82.

Hedström, P., (2006) “Experimental macro sociology”, Science 311(5762): 786–87.

Fenn, D., Suleman, O., Efstathiou, J. and Johnson, N.F. (2006) "How does Europe Make Its Mind Up? Connections, cliques, and compatibility between countries in the Eurovision Song Contest", Physica A, 360, 576.

Sumpter, D.J.T.,(2006) "The principles of collective animal behaviour", Philosophical Transactions of the Royal Society. B, 361, 5-22.

Gourley, S. and Johnson, N.F. (2006) "Effects of decision-making on the transport costs across complex networks", in Complex Systems, Spie-Int Society Optical Engineering, 6039: 603908 (2006).

Simpson, S.J., Sword A.G., Lorch, P.D & Couzin, I.D. (2006) "Cannibal crickets on a forced march for protein and salt", Proceedings of the National Academy of Sciences USA 103, 4152-4156. (pdf).

2005 -             Back 

Hedström, P.,(2005) "Dissecting the Social: On the Principles of Analytical Sociology". Cambridge University Press.

Li, C. and Maini, P.K. (2005) "Evolving network model with community structure", Journal of Physics A, 38, 9741-9749. (pdf)

Li, C. and Maini, P.K. (2005) "Complex networks generated by the Penna bit-string model: Emergence of small-world and assortative mixing", Physical Review E, 72, 045102(R), 1-4. (pdf)

McDonald, M., Suleman, O., Williams, S., Howison, S. and Johnson, N.F. (2005) "Detecting a currency's dominance or dependence using foreign exchange network trees", Physical Review. E 72, 046106.

Rao, Yunqing and Efstathiou, J. (2005) “An agent-based control architecture for agile manufacturing systems”, Proceedings of the 3rd International Conference on Responsive Manufacturing (ICRM2005), Guangzhou, China, 12-14 September, 2005, pp.82-87.

Liu, Y., Efstathiou, J. and Duncan M., (2005) “Integrating the design of a facility with its scheduling policy”, Factory Automation and Intelligent Manufacturing, FAIM, Bilbao, July 2005.

Alarcon, T., Byrne, H.M. and Maini, P.K. (2005) "A multiple scale model for tumour growth", SIAM J. Multiscale Modelling and Simulation, 3(2), 440-475. (pdf)

Johnson, N.F., McDonald, M., Suleman, O., Williams, S. and S. Howison (2005) "What shakes the FX tree? Understanding currency dominance, dependence and dynamics", in Noise and Fluctuations in Econophysics and Finance, Spie-Int Society Optical Engineering, 5848: 86 (2005).

Mitman, K.E., Choe, S.C. and Johnson, N.F. (2005) "Competitive advantage for multiple-memory strategies in an artificial market", in Noise and Fluctuations in Econophysics and Finance, Spie-Int Society Optical Engineering, 5848: 225 (2005).

Lo, T. S., Chan, K.P., Hui, P.M. and Johnson, N.F. (2005) "Theory of enhanced performance emerging in a sparsely connected competitive population", Physical Review. E, 71, 050101.

Hensor, E.M.A., Couzin, I. D., James, R. & Krause, J. (2005) "Modelling density-dependent fish shoal distributions in the laboratory and the field", Oikos 110(2), 344-352. (pdf)

Alarcon, T., Byrne, H.M. and Maini, P.K. (2005) "A design principle for vascular beds: the effects of complex blood rheology", Microvascular Research, 69, 156-172. (pdf)

Wrege, P., Wikelski, M., Mandel, J.T. Rassweiler, T & Couzin, I. D. (2005) "Antbirds parasitize foraging army ants"Ecology 86(3), 555-559.

Ashton, D.J., Jarrett, T.C. and Johnson, N.F. (2005) "Effect of Congestion Costs on Shortest Paths Through Complex Networks", Physical Review Letters. 94, 058701 : Also selected for the February 15, 2005 issue of Virtual Journal of Biological Physics Research.

Couzin, I.D., Krause, J., Franks, N.R. & Levin, S.A.(2005) "Effective leadership and decision making in animal groups on the move". Nature 433, 513-516.

2004 -                 Back 

Choe, S.C., Johnson, N.F., Hui, P.M. (2004) "Error-driven global transition in a competitive population on a network", Rapid Communication, Physical Review. E 70, 055101 (2004): Also selected for the November 15, 2004 issue of Virtual Journal of Biological Physics Research.

Lo, T.S., Chan, H.Y., Hui, P.M., Johnson, N.F. (2004) "Theory of networked minority games based on strategy pattern dynamics", Physical Review. E 70, 056102 (2004).

Kay, R. Johnson, N.F. (2004) "Memory and self-induced shocks in an evolutionary population competing for limited resources", Physical Review. E 70, 056101 (2004).

Hedström, P., (2004) “Social mechanisms and social dynamics” Pp. 557-576 in C.M. Macal, D.L. Sallach & M.J. North, eds., Social Dynamics: Interaction, Reflexivity and Emergence (Proceedings of Agent 2004). Argonne, IL: Argonne National Laboratory.

Gourley, S., Choe, S.C., Hui, P.M., Johnson, N.F. (2004) "Effects of local connectivity in a competitive population with limited resources", Europhysics Letters. 67, 867 (2004).

Johnson, N.F., Choe, S.C., Gourley, S. Jarrett, T., Hui, P.M. (2004) “Theory of Collective Dynamics in Multi-Agent Complex Systems”, in Advances in Solid State Physics, Vol. 44, p.427, edited by B. Kramer (Springer-Verlag, Heidelberg, 2004).

Lamper, D., Jefferies, P., Hart, M. and Johnson, N.F. (2004) "Managing Catastrophic Changes in a Collective”, in Collectives and the Design of Complex Systems, ed. K. Tumer and D. Wolpert, (Springer, New York, 2004), p. 161.

Yip, K.F., Lo, T.S., Hui, P.M., Johnson, N.F. (2004) “Enhanced Winning in a Competing Population by Random Participation”, Physical Review. E 69, 046120 (2004).

Johnson, N.F. (2004) “Toward an Understanding of Financial Markets Using Multi-Agent Games”, in New Directions in Statistical Physics: Econophysics, Bioinformatics and Pattern Recognition ed. Luc T. Wille (Springer, Berlin, 2004), p. 115.