Previous Network Journal Club meetings

Wednesday 9th May 2012 12:00
T14 of the Mathematical Institute
Speaker: Lucas Jeub
The landscape of complex networks
Authors: E. Weinan, Jianfeng Lu, Yuan Yao

Wednesday 2nd May 2012 12:00
T14 of the Mathematical Institute
Speaker: Nimish Telang

Thursday 26th April 2012 12:30
T14 of the Mathematical Institute
Speaker: Mihai Cucuringu
Synchronization over Z2 and community detection in bipartite networks

Thursday 8th March 2012 12:30
T14 of the Mathematical Institute
Speaker: Davide Cellai
Critical phenomena in heterogeneous k-core percolation

Thursday 1st March 2012 12:30
T14 of the Mathematical Institute
Speaker: Martin Gould
Kernel Density Estimation: The Final Nail in the Histogram's Coffin
Authors: Berwin A. Turlach

Thursday 23rd February 2012 12:30
T14 of the Mathematical Institute
Speaker: Nimish Telang
Are communities just bottlenecks? Trees and treelike networks have high modularity
Author: James P. Bagrow

Thursday 16th February 2012 12:30
T14 of the Mathematical Institute
Speaker: Puck Rombach
Cliques in random scale-free networks

Thursday 9th February 2012 12:30
T14 of the Mathematical Institute
Speaker: Fiona Skerman
The Distribution of Degree Sequences in Random Graphs

Thursday 26th January 2012 12:30
T14 of the Mathematical Institute
Speaker: Marya Bazzi
Are communities just bottlenecks? Trees and treelike networks have high modularity
Authors: James P. Bagrow

Thursday 19th January 2012 12:30
T14 of the Mathematical Institute
Speaker: Lucas Jeub
Extracting information about community structure using an ensemble of high-modularity partitionss (1, 2)

Thursday 1st December 2011 12:30
T14 of the Mathematical Institute
Speaker: Lutz Warnke
Explosive percolation is continuous
Authors: Oliver Riordan, Lutz Warnke

Thursday 24th November 2011 12:30
T14 of the Mathematical Institute
Speaker: Kitty Meeks
The complexity of flood-filling games on graphs
Authors: Kitty Meeks and Alexander Scott

Thursday 17th November 2011 12:30
T14 of the Mathematical Institute
Speaker: Elizabeth Leicht
Duality between Time Series and Networks
Authors: Andriana S. L. O. Campanharo, M. Irmak Sirer, R. Dean Malmgren, Fernando M. Ramos, Luís A. Nunes. Amaral

Thursday 10th November 2011 12:30
T14 of the Mathematical Institute
Speaker: Marta Sarzynska
Examining network structures in relation to the spread of infectious disease

Thursday 3rd November 2011 12:30
T14 of the Mathematical Institute
Speaker: Sumeet Agarwali
Controllability of complex networks
Authors: Yang-Yu Liu, Jean-Jacques Slotine & Albert-László Barabási
Few inputs can reprogram biological networks
Authors: Franz-Josef Müller & Andreas Schuppert
Liu et al. reply
Authors: Yang-Yu Liu, Jean-Jacques Slotine & Albert-László Barabási

Thursday 27th October 2011 12:30
T14 of the Mathematical Institute
Speaker: Puck Rombach
Core-periphery structures in networks

Monday 1st August 2011 13:30
Audrey Wood Room of the Clarendon Physics Laboratory
Speaker: Sumeet Agarwali
Non-adaptive origins of interactome complexity
Authors: Ariel Fernández, Michael Lynch
Modeling the topology of protein interaction networks
Authors: Christian M. Schneider, Lucilla de Arcangelis, Hans J. Herrmann

Monday 25th July 2011 13:30
Audrey Wood Room of the Clarendon Physics Laboratory
Speaker: Ben Fulcher
On the Need for Time Series Data Mining Benchmarks: A Survey and Empirical Demonstration
Authors: Keogh, E. and Kasetty, S.

Monday 4th July 2011 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Sumeet Agarwal
Uncovering the Temporal Dynamics of Diffusion Networks
Authors: Manuel Gomez Rodriguez, David Balduzzi, Bernhard Schölkopf

Monday 27th June 2011 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Jamie King
Networks and the Epidemiology of Infectious Disease
Authors: Danon, Ashley P. Ford, Thomas House, Chris P. Jewell, Matt J.Keeling, Gareth O. Roberts, Joshua V. Ross, Matthew C. Vernon

Monday 20th June 2011 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Anna Lewis
Protein-protein interactions through evolution

Tuesday 31st May 2011 14:00
Conference Room Dennis Wilkinson Physics Building
Speaker: Sam Johnson
Interplay between Network Topology and Dynamics in Neural Systems

Monday 23rd May 2011 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: David Smith
Network Visualization

Monday 16th May 2011 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Ben Fulcher
The Empirical Structure of Signals and their Methods

Monday 18th April 2011 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Gabriel Villar
Mitochondrial Variability as a Source of Extrinsic Cellular Noise
Authors: Iain G. Johnston, Bernadett Gaal, Ricardo Pires das Neves, Tariq Enver, Francisco J. Iborra, Nick S. Jones

Monday 11th April 2011 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Jamie King
Communities of Minima in Local Optima Networks of Combinatorial Spaces
Authors: Fabio Daolio, Marco Tomassini, Sebastien Verel, Gabriela Ochoa

Monday 28th March 2011 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Sumeet Agarwali
Minimal Models of Multidimensional Computations
Authors: Jeffrey D. Fitzgerald, Lawrence C. Sincich, Tatyana O. Sharpee

Monday 7th March 2011 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Ornella Cominetti
Clustering Malarial Disease Symptoms

Monday 28th February 2011 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Jain Johnson
Fundamental limits on the suppression of molecular fluctuations
Authors: Ioannis Lestas, Glenn Vinnicombe, Johan Paulsson

Monday 7th February 2011 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Binh Minh Bui Xuan
Decomposing graphs: insights from combinatorial optimisation

Monday 31st January 2011 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Kathryn Cooper
Role-based similarity in directed networks
Cross-network comparison with directional role similarity
Authors: Kathryn Cooper, Mauricio Barahona

Monday 24th January 2011 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Luke Heaton
Branching pattern formation that reflects the history of signal propagation
Authors: Ikuko Motoike, Hisako Takigawa-Imamura

Monday 17th January 2011 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Ben Fulcher
Machine Learning and Its Applications to Biology
Authors: Adi L. Tarca, Vincent J. Carey, Xue-wen Chen, Roberto Romero, Sorin Draghici

Monday 6th December 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Jari Saramäki
Small But Slow World: How Network Topology and Burstiness Slow Down Spreading
Authors:M. Karsai, M. Kivelä, R. K. Pan, K. Kaski, J. Kertész, A.-L. Barabási, J. Saramäki

Monday 29th November 2010 13:00
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Martin Gould
The Mysterious Limit Order Book (1, 2, 3, 4)

Monday 22nd November 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Sumeet Agarwal
Evolvability
Author: Leslie Valiant

Monday 15th November 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Iain Johnston
Modeling Mitochondrial Bioenergetics with Integrated Volume Dynamics
Authors: Jason N. Bazil, Gregery T. Buzzard, Ann E. Rundell
A Biophysical Model of the Mitochondrial Respiratory System and Oxidative Phosphorylation
Author: Daniel A. Beard

Monday 8th November 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Luke Heaton
Spatial Networks
Author: Marc Barthelemy

Monday 1st November 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Stephen Smith
Network modelling methods for FMRI
Authors: Stephen M. Smith, Karla L. Miller, Gholamreza Salimi-Khorshidi, Matthew Webster, Christian F. Beckmann, Thomas E. Nichols, Joseph D. Ramsey and Mark W. Woolrich

Tuesday 26th October 2010 13:00-15:00
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: James King
Combinatorial Landscapes
Author: Christian M. Reidys and Peter F. StadlerSource

Monday 17th October 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Annthony Lee
Recent Monte Carlo Approaches

Monday 4th October 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Sumeet Agarwal
Recent Developments in Community Detection (1, 2, 3)

Monday 20th September 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Mark Ebden
Exact Marginalization in Graphs
Author: David J. C. MacKay

Monday 9th August 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Sumeet Agarwal
Categorial Compositionality: A Category Theory Explanation for the Systematicity of Human Cognition
Authors: Steven Phillips, William H. Wilson

Monday 26th July 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Samuel Johnson
Cluster Reverberation: a mechanism for robust short-term memory without synaptic learning
Authors: Samuel Johnson, J. Marro, Joaquín J. Torres

Monday 19th July 2010 13:30
Conference Room, Denys Wilkinson Building - different venue!!!
Speaker: Ashwin Srinivasan
Inductive Logic Programming: Therory and methods
Authors: Stephen Muggleton and Luc de Raedt

Monday 12th July 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Binh-Minh Bui-Xuan
Optimization in parameterized complexity: a divide-and-conquer strategy

Monday 5th July 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Anna Lewis
The Cult of Statistical Significance: How the Standard Error Costs Us Jobs, Justice, and Lives
Authors: Stephen T. Ziliak, Deirdre N. McCloskeyi

Monday 21st June 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Martin Gould
Extracting the multiscale backbone of complex weighted networks
Authors: M. Angeles Serrano, Marian Boguna, Alessandro Vespignani

Monday 14th June 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Matt Grove
Ranging patterns of hamadryas baboons: random walk analyses
Authors: Amy L. Schreier, Matt Grove

Monday 7th June 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Ben Fulcher
Quantitative physiologically based modeling of subjective fatigue during sleep deprivation
Authors: Fulcher BD, Phillips AJ, Robinson PA.

Monday 31st May 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Bernadett Gaál
Exact Results for the Evolution of Stochastic Switching in Variable Asymmetric Environments
Authors: Bernadett Gaál, Jonathan W. Pitchford and A. Jamie Wood

Monday 17th May 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Tomaso Aste
Disordered spherical bead packs are anisotropic
Authors: G. E. Schröder-Turk , W. Mickel , M. Schröter , G. W. Delaney , M. Saadatfar , T. J. Senden , K. Mecke , T. Aste

Monday 10th May 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Anna Lewis
Model criticism based on likelihood-free inference, with an application to protein network evolution
Authors: Oliver Ratmann, Christophe Andrieu, Carsten Wiuf and Sylvia Richardson

Monday 8th March 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Nick Jones
A felling for the numbers in biology
Authors: Rob Phillipsa and Ron Milo

Monday 1st March 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Anna Lewis
Protein sectors: evolutionary units of three-dimensional structure.
Authors: Halabi N, Rivoire O, Leibler S, Ranganathan R.

Monday 15th February 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Ben Fulcher
From time series to complex networks: the visibility graph.
Authors: Lucas Lacasa, Bartolo Luque, Fernando Ballesteros, Jordi Luque, Juan Carlos Nuño

Monday 8th February 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Sumeet Agarwal
Active Learning for Hidden Attributes in Networks
Authors: X. Ran Yan, Y. J. Zhu, J.B. Rouquier, C. Moore

Monday 1st February 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Puck Rombach
Community detection in networks with positive and negative links
Author: V.A Traag, J. Bruggeman

Monday 25th January 2010 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Sergey Melnik (Limerick)
Cascades on correlated and modular random networks
Author: J.P Gleeson

Monday 30th November 2009 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Luke Heaton
Transoport and dispersion in random networks with percolation disorder
Authors: J. Koplik, S. Redner, D. Wilkinson

Monday 9th November 2009 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: David Smith
Diffusion-based method for producing density-equalizing maps
Authors: Michael T. Gastner and M. E. J. Newman

Monday 26th October 2009 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Martin Gould
Elegance and Error: The Strengths and Weaknesses of Networks
Techniques as Tools for Data Mining
Authors: Mark McDonald, Omer Suleman, Stacy Williams, Sam Howison, Neil F. Johnson

Monday 19th October 2009 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Sumeet Agarwal
A Markov model of the Indus script
Authors: Rajesh P. N. Raoa,1, Nisha Yadavb,c, Mayank N. Vahiab,c, Hrishikesh Joglekard, R. Adhikarie and Iravatham Mahadevanf

Monday 12th October 2009 13:30
Mendelssohn Room of the Clarendon Physics Laboratory
Speaker: Max Little
The Power of Convex Relaxation: Near-Optimal Matrix Completion
Authors: Emmanuel J. Candes, Terence Tao

Monday 5th October
11.00am
Audrey Wood Room on the first floor of the Clarendon Physics Lab
Speakers: Erik Bollt and Jie Sun
 
Tuesday 25th August 2009
11.30am
Audrey Wood Room in the Clarendon Lab in Physics
Speaker: Anna Lewis
“Tailored graph ensembles as proxies or null models for real networks I: tools for quantifying structure”
by A. Annibale, A.C.C. Coolen, L.P. Fernandes, F. Fraternali, J. Kleinjung

Monday 6th July 2009
11.30am
Seminar Room 501, Denys Wilkinson Building, Physics Department
Speaker 1: Guido Klingebeil
“Efficient Parallelization of Stochastic Simulation Algorithm for Chemically Reacting Systems on the Graphics Processing Unit”
by Hong Li & Linda Petzold
 
Speaker 2: Luke Heaton
“Sizing Up Allometric Scaling Theory”
by Van M. Savage, Eric J. Deeds, Walter Fontana
 
 
Monday 22nd June 2009
11.30am
Seminar Room 501, Denys Wilkinson Building, Physics Department
Speaker: Thanasis Athanasios
"Tracking Parkinson's disease progression using speech signal
processing in a telemonitoring framework"
by Athanasios Tsanas, Max A. Little, Patrick E. McSharry, Lorraine
Ramig.
 
 
Monday 8th June 2009
11.30am
Seminar Room 501, Denys Wilkinson Building, Physics Department
Speaker: Sumeet Agarwal
“Learning Nonlinear Dynamic Models”
by John Langford, Ruslan Salakhutdinov, Tong Zhang
 
 
Monday 1st June 2009
11.30am
Speaker: Tim Evans (Imperial)
“Line Graphs, Link Partitions and Overlapping Communities”
by T.S.Evans, R.Lambiotteminar Room 501, Denys Wilkinson Building, Physics Department

Monday 2nd March 2009
Speaker: Phillip Staniczenko
"Network structure and biodiversity loss in food webs: robustness increases with connectance"
by Dunne, J. A., Williams, R. J., and Martinez, N. D.

Monday 23rd February 2009
Speaker: Alex Fletcher
"The transition from differential equations to Boolean networks: A case study in simplifying a regulatory network model"
by Davidich, M. and Bornholdt, S.